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Selected papers from the lab:

PrePrint: Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes.
Luppino JM, Park D, Nguyen SC, Lan Y, Xu Z, Joyce EF. bioRxiv. 2019

Programmable Chromosome Painting with Oligopaints.
Nguyen SC and Joyce EF. Methods in Molecular Biology. 2019. Aug. PMID: 31407284

ARID1A spatially partitions interphase chromosomes.
Wu S, Fatkhutdinov N, Rosin L, Luppino JM, Iwasaki O, Tanizawa H, Tang HY, Kossenkov AV, Gardini A, Noma KI, Speicher DW, Joyce EF, Zhang R. Science Advances. 2019. May. PMID: 31131328.

Recurrent losses and rapid evolution of the condensin II complex in insects.
King TD, Leonard CJ, Cooper JC, Nguyen SC, Joyce EF, Phadnis N. Molecular Biology and Evolution. 2019. July. PMID: 31270536

Condensin II drives large-scale folding and spatial partitioning of interphase chromosomes in Drosophila nuclei.
Rosin LF, Nguyen SC, Joyce EF. PLoS Genetics. 2018. July. PMID: 30001329.

Toward High-Throughput and Multiplexed Imaging of Genome Organization.
Joyce EF. Assay and Drug Development Technologies. 2017 Jan. PMID: 28092459.

Selected earlier papers:

Investigating the Interplay between Sister Chromatid Cohesion and Homolog Pairing in Drosophila Nuclei.
Senaratne TN, Joyce EF, Nguyen SC, Wu CT. PLoS Genetics. 2016 Aug 19. PMID: 27541002.

Dynamic and Stable Cohesins Regulate Synaptonemal Complex Assembly and Chromosome Segregation.
Gyuricza MR, Manheimer KB, Apte V, Krishnan B, Joyce EF, McKee BD, McKim KS. Current Biology. 2016 Jul 11. PubMed PMID: 27291057.

Pairing and anti-pairing: a balancing act in the diploid genome.
Joyce EF, Erceg J, Wu CT. Curr Opin Genet Dev. 2016 Apr PMID: 27065367.

Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes.
Beliveau BJ, Boettiger AN, Avendaño MS, Jungmann R, McCole RB, Joyce EF, Kim-Kiselak C, Bantignies F, Fonseka CY, Erceg J, Hannan MA, Hoang HG, Colognori D, Lee JT, Shih WM, Yin P, Zhuang X, Wu CT. Nature Communications. 2015 May 12 PMID: 25962338.

Germline progenitors escape the widespread phenomenon of homolog pairing during Drosophila development.
Joyce EF, Apostolopoulos N, Beliveau BJ, Wu CT. PLoS Genetics. 2013 PMID: 24385920.

Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.
*Beliveau BJ, *Joyce EF, Apostolopoulos N, Yilmaz F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard JM, Wu CT. PNAS. 2012 Dec 26. PMID: 23236188. *co-first authors

Identification of genes that promote or antagonize somatic homolog pairing using a high-throughput FISH-based screen.
Joyce EF, Williams BR, Xie T, Wu CT. PLoS Genetics. 2012 PMID: 22589731.

Multiple barriers to nonhomologous DNA end joining during meiosis in Drosophila.
Joyce EF, Paul A, Chen KE, Tanneti N, McKim KS. Genetics. 2012 Jul PMID: 22542963.

A pathway for synapsis initiation during zygotene in Drosophila oocytes.
Tanneti NS, Landy K, Joyce EF, McKim KS. Current Biology. 2011 Nov 8. PMID: 22036181.

Drosophila ATM and ATR have distinct activities in the regulation of meiotic DNA damage and repair.
Joyce EF, Pedersen M, Tiong S, White-Brown SK, Paul A, Campbell SD, McKim KS. Journal of Cell Biology. 2011 Oct 31. PMID: 22024169.

Meiotic checkpoints and the interchromosomal effect on crossing over in Drosophila females.
Joyce EF, McKim KS. Fly. 2011 Apr PMID: 21339705.

Drosophila I-R hybrid dysgenesis is associated with catastrophic meiosis and abnormal zygote formation.
Orsi GA, Joyce EF, Couble P, McKim KS, Loppin B. Journal of Cell Science. 2010 Oct 15. PMID: 20841382.

Chromosome axis defects induce a checkpoint-mediated delay and interchromosomal effect on crossing over during Drosophila meiosis.
Joyce EF, McKim KS. PLoS Genetics. 2010 Aug 12. PMID: 20711363.

Cytological analysis of meiosis in fixed Drosophila ovaries.
McKim KS, Joyce EF, Jang JK. Methods Mol Biol. 2009 PMID: 19685326.

Drosophila hold’em is required for a subset of meiotic crossovers and interacts with the dna repair endonuclease complex subunits MEI-9 and ERCC1.
Joyce EF, Tanneti SN, McKim KS. Genetics. 2009 Jan PMID: 18957705.

Drosophila PCH2 is required for a pachytene checkpoint that monitors double-strand-break-independent events leading to meiotic crossover formation. 
Joyce EF, McKim KS. Genetics. 2009 Jan PMID: 18957704.

When specialized sites are important for synapsis and the distribution of crossovers.
Joyce EF, McKim KS. Bioessays. 2007 Mar PMID: 17295219.